Transcript: ENST00000536184.2 VAC14-005

Description

Vac14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25507]

Gene Synonyms

ArPIKfyve, FLJ10305, TAX1BP2, TRX

Location

Chromosome 16: 70,721,345-70,734,148 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 6317 variant alleles and maps to 267 oligo probes.

Gene

This transcript is a product of gene ENSG00000103043.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261776.5	VAC14-001	3099	782aa	ENSP00000261776.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10896	B3KSM8 Q08AM6 Q9NTB8	NM_018052.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536184.2	VAC14-005	2161	214aa	ENSP00000439284.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KSM8 Q9NTB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566416.1	VAC14-010	780	260aa	ENSP00000455731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567648.1	VAC14-012	702	17aa	ENSP00000463485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568548.1	VAC14-003	2945	40aa	ENSP00000454650.1	Nonsense mediated decay		H3BN23	-	-
ENST00000568886.1	VAC14-002	2151	201aa	ENSP00000457809.1	Nonsense mediated decay		H3BUU8	-	-
ENST00000571759.1	VAC14-013	3609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561879.1	VAC14-008	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566655.1	VAC14-007	1391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564685.1	VAC14-006	892	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563662.1	VAC14-009	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564512.1	VAC14-011	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,161 bps, Translation length: 214 residues

Version

ENST00000536184.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000434934 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000536184.2 VAC14-005

Summary