Transcript: ENST00000554365.1 SPTLC2-004

Description

serine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:11278]

Gene Synonyms

HSN1C, KIAA0526, LCB2, LCB2A, NSAN1C, SPT2, hLCB2a

Location

About this transcript

This transcript has 3 exons, is associated with 2388 variant alleles and maps to 124 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216484.2	SPTLC2-001	8170	562aa	ENSP00000216484.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9865	O15270	NM_004863.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554901.1	SPTLC2-002	1518	407aa	ENSP00000452189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556607.1	SPTLC2-005	460	40aa	ENSP00000451029.1	Nonsense mediated decay		H0YJ96	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556264.1	SPTLC2-006	263	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554365.1	SPTLC2-004	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557566.1	SPTLC2-003	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 604 bps,

Version

ENST00000554365.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414033 (version 1)