Transcript: ENST00000542754.2 AP4S1-002

Description

adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575]

Gene Synonyms

AP47B, CLA20, CLAPS4, CPSQ6, SPG52

Location

Chromosome 14: 31,494,672-31,562,818 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 30378 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSG00000100478.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216366.4	AP4S1-001	2256	159aa	ENSP00000216366.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9642	G3V4P7 Q9Y587	NM_007077.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554345.1	AP4S1-005	1491	135aa	ENSP00000450768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58310	G3V4P7 Q9Y587	NM_001254726.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542754.2	AP4S1-002	1405	144aa	ENSP00000438170.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45093	G3V3X7 G3V4P7 Q9Y587	NM_001254728.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334725.4	AP4S1-003	1122	149aa	ENSP00000334484.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58309	G3V4P7 Q9Y587	NM_001254727.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554609.1	AP4S1-004	1012	102aa	ENSP00000452383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4P7 G3V5J6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000313566.6	AP4S1-201	817	144aa	ENSP00000322508.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4P7 J3KNK4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555417.1	AP4S1-008	769	7aa	ENSP00000451609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557346.1	AP4S1-006	663	133aa	ENSP00000451479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3X7 G3V4P7	NM_001254729.1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556232.1	AP4S1-007	542	98aa	ENSP00000451918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4P7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556480.1	AP4S1-009	407	83aa	ENSP00000451614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJI3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,405 bps, Translation length: 144 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y587

CCDS

This transcript is a member of the Human CCDS set: CCDS45093

Version

ENST00000542754.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000409723 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000542754.2 AP4S1-002

Summary