Transcript: ENST00000396884.2 SOX10-002

Description

SRY (sex determining region Y)-box 10 [Source:HGNC Symbol;Acc:11190]

Gene Synonyms

DOM, PCWH, WS2E, WS4, WS4C

Location

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 5495 variant alleles and maps to 446 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396884.2	SOX10-002	2879	466aa	ENSP00000380093.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13964	A6PVD3 P56693	NM_006941.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360880.2	SOX10-001	2861	466aa	ENSP00000354130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13964	A6PVD3 P56693	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446929.1	SOX10-004	1095	179aa	ENSP00000399777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427770.1	SOX10-003	873	213aa	ENSP00000414853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVD3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470555.1	SOX10-005	124	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,879 bps, Translation length: 466 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P56693

CCDS

This transcript is a member of the Human CCDS set: CCDS13964

Version

ENST00000396884.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000313875 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.