Transcript: ENST00000488921.1 SPTLC1-004

Description

serine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:11277]

Gene Synonyms

HSAN1, HSN1, LBC1, LCB1, SPT1, SPTI, hLCB1

Location

About this transcript

This transcript has 5 exons, is associated with 3076 variant alleles and maps to 170 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262554.2	SPTLC1-001	1894	473aa	ENSP00000262554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6692	B4DR90 O15269	NM_006415.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337841.4	SPTLC1-002	946	143aa	ENSP00000337635.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6693	O15269	NM_178324.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482632.1	SPTLC1-006	837	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461132.1	SPTLC1-005	808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488921.1	SPTLC1-004	686	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469778.1	SPTLC1-008	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477888.1	SPTLC1-007	359	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 686 bps,

Version

ENST00000488921.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055556 (version 1)