Transcript: ENST00000337841.4 SPTLC1-002

Description

serine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:11277]

Gene Synonyms

HSAN1, HSN1, LBC1, LCB1, SPT1, SPTI, hLCB1

Location

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 15996 variant alleles and maps to 261 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262554.2	SPTLC1-001	1894	473aa	ENSP00000262554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6692	B4DR90 O15269	NM_006415.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337841.4	SPTLC1-002	946	143aa	ENSP00000337635.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6693	O15269	NM_178324.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482632.1	SPTLC1-006	837	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461132.1	SPTLC1-005	808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488921.1	SPTLC1-004	686	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469778.1	SPTLC1-008	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477888.1	SPTLC1-007	359	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 946 bps, Translation length: 143 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15269

CCDS

This transcript is a member of the Human CCDS set: CCDS6693

Version

ENST00000337841.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055554 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.