Transcript: ENST00000485046.1 PLOD1-004

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 [Source:HGNC Symbol;Acc:9081]

Gene Synonyms

EDS6, LH, LH1, LLH, PLOD

Location

Chromosome 1: 11,994,262-12,018,677 forward strand.

About this transcript

This transcript has 9 exons, is associated with 11307 variant alleles and maps to 224 oligo probes.

Gene

This transcript is a product of gene ENSG00000083444.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000196061.4	PLOD1-001	2940	727aa	ENSP00000196061.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS142	Q02809 Q9UL44	NM_000302.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376369.3	PLOD1-201	2655	774aa	ENSP00000365548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DR87 Q5JXB8 Q9UL44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429000.2	PLOD1-003	886	283aa	ENSP00000405372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JXB7 Q9UL44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449038.1	PLOD1-005	762	225aa	ENSP00000414443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JXB8 Q9UL44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485046.1	PLOD1-004	991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000358133.5	PLOD1-006	819	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491536.1	PLOD1-009	639	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481933.1	PLOD1-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465920.1	PLOD1-007	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470133.1	PLOD1-010	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 991 bps,

Version

ENST00000485046.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006868 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000485046.1 PLOD1-004

Summary