Transcript: ENST00000196061.4 PLOD1-001

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 [Source:HGNC Symbol;Acc:9081]

Gene Synonyms

EDS6, LH, LH1, LLH, PLOD

Location

Chromosome 1: 11,994,810-12,035,594 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 9 domains and features, is associated with 19713 variant alleles and maps to 614 oligo probes.

Gene

This transcript is a product of gene ENSG00000083444.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000196061.4	PLOD1-001	2940	727aa	ENSP00000196061.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS142	Q02809 Q9UL44	NM_000302.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376369.3	PLOD1-201	2655	774aa	ENSP00000365548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DR87 Q5JXB8 Q9UL44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429000.2	PLOD1-003	886	283aa	ENSP00000405372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JXB7 Q9UL44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449038.1	PLOD1-005	762	225aa	ENSP00000414443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JXB8 Q9UL44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485046.1	PLOD1-004	991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000358133.5	PLOD1-006	819	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491536.1	PLOD1-009	639	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481933.1	PLOD1-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465920.1	PLOD1-007	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470133.1	PLOD1-010	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,940 bps, Translation length: 727 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02809

CCDS

This transcript is a member of the Human CCDS set: CCDS142

Version

ENST00000196061.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000006865 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000196061.4 PLOD1-001

Summary