Transcript: ENST00000353891.5 CLTCL1-002

Description

clathrin, heavy chain-like 1 [Source:HGNC Symbol;Acc:2093]

Gene Synonyms

CHC22, CLH22, CLTCL, CLTD

Location

Chromosome 22: 19,166,986-19,279,208 reverse strand.

About this transcript

This transcript has 32 exons, is annotated with 43 domains and features, is associated with 48868 variant alleles and maps to 918 oligo probes.

Gene

This transcript is a product of gene ENSG00000070371.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263200.10	CLTCL1-001	5513	1640aa	ENSP00000445677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46662	P53675	NM_007098.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427926.1	CLTCL1-201	5512	1640aa	ENSP00000441158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P53675	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353891.5	CLTCL1-002	5313	1583aa	ENSP00000439662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54497	P53675	NM_001835.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449918.1	CLTCL1-004	582	169aa	ENSP00000443264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5N6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505027.2	CLTCL1-008	4859	1260aa	ENSP00000424145.2	Nonsense mediated decay		J3KR87	-	-
ENST00000458188.2	CLTCL1-012	574	43aa	ENSP00000396140.2	Nonsense mediated decay		H0Y529	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000538828.1	CLTCL1-013	448	67aa	ENSP00000443582.1	Nonsense mediated decay		H0YGJ9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000442042.2	CLTCL1-009	1714	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536806.1	CLTCL1-010	1695	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000413132.2	CLTCL1-007	4994	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000412649.1	CLTCL1-003	4635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540896.1	CLTCL1-011	477	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 32, Coding exons: 31, Transcript length: 5,313 bps, Translation length: 1,583 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P53675

CCDS

This transcript is a member of the Human CCDS set: CCDS54497

Version

ENST00000353891.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000316398 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000353891.5 CLTCL1-002

Summary