Transcript: ENST00000590635.1 CTDP1-005

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:HGNC Symbol;Acc:2498]

Gene Synonyms

CCFDN, FCP1

Location

Chromosome 18: 77,440,849-77,457,960 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 9376 variant alleles and maps to 81 oligo probes.

Gene

This transcript is a product of gene ENSG00000060069.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299543.7	CTDP1-001	3753	961aa	ENSP00000299543.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12017	K7EPW4 Q9Y5B0	NM_004715.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000075430.7	CTDP1-002	3538	867aa	ENSP00000075430.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12018	K7EPW4 Q9Y5B0	NM_048368.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591598.1	CTDP1-003	3228	799aa	ENSP00000465119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJD2 K7EPW4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590635.1	CTDP1-005	489	78aa	ENSP00000467563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPW4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587623.1	CTDP1-007	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000585951.1	CTDP1-006	381	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590599.1	CTDP1-004	1762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 489 bps, Translation length: 78 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000590635.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450527 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000590635.1 CTDP1-005

Summary