Transcript: ENST00000299543.7 CTDP1-001

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 [Source:HGNC Symbol;Acc:2498]

Gene Synonyms

CCFDN, FCP1

Location

Chromosome 18: 77,439,801-77,514,510 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features, is associated with 40597 variant alleles and maps to 526 oligo probes.

Gene

This transcript is a product of gene ENSG00000060069.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299543.7	CTDP1-001	3753	961aa	ENSP00000299543.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12017	K7EPW4 Q9Y5B0	NM_004715.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000075430.7	CTDP1-002	3538	867aa	ENSP00000075430.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12018	K7EPW4 Q9Y5B0	NM_048368.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591598.1	CTDP1-003	3228	799aa	ENSP00000465119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJD2 K7EPW4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590635.1	CTDP1-005	489	78aa	ENSP00000467563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPW4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587623.1	CTDP1-007	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000585951.1	CTDP1-006	381	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590599.1	CTDP1-004	1762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,753 bps, Translation length: 961 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5B0

CCDS

This transcript is a member of the Human CCDS set: CCDS12017

Version

ENST00000299543.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256432 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000299543.7 CTDP1-001

Summary