Transcript: ENST00000298564.10 TSPAN17-009

Description

tetraspanin 17 [Source:HGNC Symbol;Acc:13594]

Gene Synonyms

FBX23, FBXO23, TM4SF17

Location

Chromosome 5: 176,074,468-176,086,055 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 5665 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000048140.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298564.10	TSPAN17-009	2810	188aa	ENSP00000298564.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96FV3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405525.2	TSPAN17-201	2555	266aa	ENSP00000385665.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7R4	NM_001006616.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310032.8	TSPAN17-001	2550	332aa	ENSP00000309036.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34298	J3KNG2	NM_130465.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508164.1	TSPAN17-003	2457	329aa	ENSP00000422053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54952	Q96FV3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515708.1	TSPAN17-002	2361	263aa	ENSP00000426650.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47346	Q96FV3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503045.1	TSPAN17-008	1019	309aa	ENSP00000425212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504168.1	TSPAN17-007	884	257aa	ENSP00000423957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBW9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507471.1	TSPAN17-006	707	203aa	ENSP00000423610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503030.1	TSPAN17-005	909	58aa	ENSP00000425975.1	Nonsense mediated decay		D6RI03	-	-
ENST00000514705.1	TSPAN17-004	4445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,810 bps, Translation length: 188 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96FV3

Version

ENST00000298564.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387012 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000298564.10 TSPAN17-009

Summary