Transcript: ENST00000544697.1 C12orf4-006

Description

chromosome 12 open reading frame 4 [Source:HGNC Symbol;Acc:1184]

Location

Chromosome 12: 4,626,272-4,647,609 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 8584 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSG00000047621.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261250.3	C12orf4-001	3826	552aa	ENSP00000261250.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	NM_020374.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545746.1	C12orf4-002	2168	552aa	ENSP00000439996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541014.1	C12orf4-005	1049	204aa	ENSP00000440820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542080.1	C12orf4-004	561	144aa	ENSP00000442806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H744	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544258.1	C12orf4-008	727	47aa	ENSP00000444594.1	Nonsense mediated decay		H0YGS6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544697.1	C12orf4-006	685	77aa	ENSP00000439471.1	Nonsense mediated decay		F5H271	-	-
ENST00000509318.2	C12orf4-009	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535887.1	C12orf4-007	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535030.1	C12orf4-003	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 685 bps, Translation length: 77 residues

Version

ENST00000544697.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399295 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000544697.1 C12orf4-006

Summary