Transcript: ENST00000261250.3 C12orf4-001

Description

chromosome 12 open reading frame 4 [Source:HGNC Symbol;Acc:1184]

Location

Chromosome 12: 4,596,894-4,647,637 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 5 domains and features, is associated with 20527 variant alleles and maps to 588 oligo probes.

Gene

This transcript is a product of gene ENSG00000047621.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261250.3	C12orf4-001	3826	552aa	ENSP00000261250.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	NM_020374.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545746.1	C12orf4-002	2168	552aa	ENSP00000439996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541014.1	C12orf4-005	1049	204aa	ENSP00000440820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542080.1	C12orf4-004	561	144aa	ENSP00000442806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H744	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544258.1	C12orf4-008	727	47aa	ENSP00000444594.1	Nonsense mediated decay		H0YGS6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544697.1	C12orf4-006	685	77aa	ENSP00000439471.1	Nonsense mediated decay		F5H271	-	-
ENST00000509318.2	C12orf4-009	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535887.1	C12orf4-007	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535030.1	C12orf4-003	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,826 bps, Translation length: 552 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQ89

CCDS

This transcript is a member of the Human CCDS set: CCDS8528

Version

ENST00000261250.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398992 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000261250.3 C12orf4-001

Summary