Transcript: ENST00000460770.1 SYPL1-007

Description

synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]

Gene Synonyms

H-SP1, SYPL

Location

Chromosome 7: 105,732,145-105,733,698 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 705 variant alleles and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSG00000008282.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455385.2	SYPL1-002	2151	241aa	ENSP00000388336.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47685	A4D0R2 Q16563	NM_182715.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000011473.2	SYPL1-001	2127	259aa	ENSP00000011473.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5736	A4D0R1 A4D0R2 Q16563	NM_006754.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470347.1	SYPL1-004	1193	224aa	ENSP00000419070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYN0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464029.1	SYPL1-005	1017	148aa	ENSP00000417473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460770.1	SYPL1-007	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483448.1	SYPL1-003	478	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 545 bps,

Version

ENST00000460770.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000349227 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000460770.1 SYPL1-007

Summary