Transcript: ENST00000455385.2 SYPL1-002

Description

synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]

Gene Synonyms

H-SP1, SYPL

Location

Chromosome 7: 105,730,949-105,752,777 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 8805 variant alleles and maps to 457 oligo probes.

Gene

This transcript is a product of gene ENSG00000008282.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455385.2	SYPL1-002	2151	241aa	ENSP00000388336.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47685	A4D0R2 Q16563	NM_182715.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000011473.2	SYPL1-001	2127	259aa	ENSP00000011473.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5736	A4D0R1 A4D0R2 Q16563	NM_006754.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470347.1	SYPL1-004	1193	224aa	ENSP00000419070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYN0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464029.1	SYPL1-005	1017	148aa	ENSP00000417473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460770.1	SYPL1-007	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483448.1	SYPL1-003	478	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,151 bps, Translation length: 241 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16563

CCDS

This transcript is a member of the Human CCDS set: CCDS47685

Version

ENST00000455385.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000349222 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000455385.2 SYPL1-002

Summary