Transcript: ENST00000354513.5 PDGFA-002

Description

platelet-derived growth factor alpha polypeptide [Source:HGNC Symbol;Acc:8799]

Gene Synonyms

PDGF-A, PDGF1

Location

Chromosome 7: 537,946-559,031 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 12487 variant alleles and maps to 321 oligo probes.

Gene

This transcript is a product of gene ENSG00000197461.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354513.5	PDGFA-002	1308	211aa	ENSP00000346508.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34578	P04085 Q9UGN0	NM_002607.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000402802.3	PDGFA-001	2305	196aa	ENSP00000383889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47524	P04085 Q9UGN0	NM_033023.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000400761.3	PDGFA-005	689	205aa	ENSP00000383572.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYW6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000405692.2	PDGFA-006	663	86aa	ENSP00000384673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426681.2	PDGFA-004	357	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482462.1	PDGFA-003	1770	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,308 bps, Translation length: 211 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04085

CCDS

This transcript is a member of the Human CCDS set: CCDS34578

Version

ENST00000354513.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322534 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000354513.5 PDGFA-002

Summary