Transcript: ENST00000402802.3 PDGFA-001

Description

platelet-derived growth factor alpha polypeptide [Source:HGNC Symbol;Acc:8799]

Gene Synonyms

PDGF-A, PDGF1

Location

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 13578 variant alleles and maps to 500 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402802.3	PDGFA-001	2305	196aa	ENSP00000383889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47524	P04085 Q9UGN0	NM_033023.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354513.5	PDGFA-002	1308	211aa	ENSP00000346508.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34578	P04085 Q9UGN0	NM_002607.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400761.3	PDGFA-005	689	205aa	ENSP00000383572.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYW6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000405692.2	PDGFA-006	663	86aa	ENSP00000384673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426681.2	PDGFA-004	357	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482462.1	PDGFA-003	1770	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,305 bps, Translation length: 196 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04085

CCDS

This transcript is a member of the Human CCDS set: CCDS47524

Version

ENST00000402802.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322533 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.