Transcript: ENST00000505526.1 PDCD6-002

Description

programmed cell death 6 [Source:HGNC Symbol;Acc:8765]

Gene Synonyms

ALG-2, ALG2, PEF1B

Location

Chromosome 5: 271,776-312,526 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 22240 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000249915.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264933.4	PDCD6-001	1135	191aa	ENSP00000264933.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3854	O75340 Q86W51	NM_013232.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509581.1	PDCD6-006	1156	55aa	ENSP00000422691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507528.1	PDCD6-008	1088	189aa	ENSP00000423815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58940	O75340 Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505221.1	PDCD6-011	672	69aa	ENSP00000422085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58941	O75340 Q86W51	NM_001267559.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507473.1	PDCD6-012	486	104aa	ENSP00000425370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9X3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505526.1	PDCD6-002	1484	39aa	ENSP00000424201.1	Nonsense mediated decay		D6RA21	-	-
ENST00000506909.1	PDCD6-014	458	73aa	ENSP00000426003.1	Nonsense mediated decay		E7EPW6 Q86W51	-	-
ENST00000511482.1	PDCD6-009	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512466.1	PDCD6-007	3763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513582.1	PDCD6-003	3500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515587.1	PDCD6-005	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 1,484 bps, Translation length: 39 residues

Version

ENST00000505526.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367642 (version 1)

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Transcript: ENST00000505526.1 PDCD6-002

Summary