Transcript: ENST00000555450.1 ATP10A-005

Description

ATPase, class V, type 10A [Source:HGNC Symbol;Acc:13542]

Gene Synonyms

ATP10C, ATPVA, ATPVC, KIAA0566

Location

About this transcript

This transcript has 2 exons, is associated with 1491 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356865.6	ATP10A-001	6680	1499aa	ENSP00000349325.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32178	O60312	NM_024490.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555756.1	ATP10A-004	418	139aa	ENSP00000451615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJI4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000555815.1	ATP10A-002	6766	594aa	ENSP00000450480.1	Nonsense mediated decay		G3V261	-	-
ENST00000389967.4	ATP10A-003	1186	155aa	ENSP00000374617.4	Nonsense mediated decay		Q4G0S9	-	-
ENST00000553577.1	ATP10A-006	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555450.1	ATP10A-005	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 831 bps,

Version

ENST00000555450.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414832 (version 1)