Transcript: ENST00000389967.4 ATP10A-003

Description

ATPase, class V, type 10A [Source:HGNC Symbol;Acc:13542]

Gene Synonyms

ATP10C, ATPVA, ATPVC, KIAA0566

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 11122 variant alleles and maps to 249 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356865.6	ATP10A-001	6680	1499aa	ENSP00000349325.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32178	O60312	NM_024490.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000555756.1	ATP10A-004	418	139aa	ENSP00000451615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJI4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000555815.1	ATP10A-002	6766	594aa	ENSP00000450480.1	Nonsense mediated decay		G3V261	-	-
ENST00000389967.4	ATP10A-003	1186	155aa	ENSP00000374617.4	Nonsense mediated decay		Q4G0S9	-	-
ENST00000553577.1	ATP10A-006	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555450.1	ATP10A-005	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 1,186 bps, Translation length: 155 residues

Version

ENST00000389967.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000414834 (version 1)