Transcript: ENST00000489907.2 SMG5-008

Description

SMG5 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:24644]

Gene Synonyms

EST1B, KIAA1089, LPTS-RP1, LPTSRP1, RP11-54H19.7, SMG-5

Location

Chromosome 1: 156,235,928-156,237,379 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 751 variant alleles and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSG00000198952.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361813.5	SMG5-001	4559	1016aa	ENSP00000355261.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1137	Q9UPR3	NM_015327.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368267.5	SMG5-201	1274	374aa	ENSP00000357250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489907.2	SMG5-008	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476954.1	SMG5-005	1161	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473643.1	SMG5-004	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468993.1	SMG5-003	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 535 bps,

Version

ENST00000489907.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000099273 (version 2)

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Transcript: ENST00000489907.2 SMG5-008

Summary