Transcript: ENST00000402813.3 CNGA1-001

Description

cyclic nucleotide gated channel alpha 1 [Source:HGNC Symbol;Acc:2148]

Gene Synonyms

CNCG, CNCG1, CNG-1, CNG1, RCNC1, RCNCa, RCNCalpha, RP49

Location

Chromosome 4: 47,937,994-47,983,552 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 22 domains and features, is associated with 18810 variant alleles and maps to 460 oligo probes.

Gene

This transcript is a product of gene ENSG00000198515.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402813.3	CNGA1-001	2867	759aa	ENSP00000384264.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47050	D6R978 D6RCF1 P29973	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544810.1	CNGA1-202	2863	690aa	ENSP00000443401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43226	D6R978 D6RCF1 P29973	NM_001142564.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514170.1	CNGA1-006	2837	690aa	ENSP00000426862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43226	D6R978 D6RCF1 P29973	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420489.2	CNGA1-007	2746	690aa	ENSP00000389881.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43226	D6R978 D6RCF1 P29973	NM_000087.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358519.4	CNGA1-201	2627	690aa	ENSP00000351320.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43226	D6R978 D6RCF1 P29973	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513178.1	CNGA1-005	589	99aa	ENSP00000423327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R978	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504722.1	CNGA1-008	543	128aa	ENSP00000423721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R978 D6RCF1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514520.1	CNGA1-009	405	99aa	ENSP00000421110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R978	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506118.1	CNGA1-004	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,867 bps, Translation length: 759 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29973

CCDS

This transcript is a member of the Human CCDS set: CCDS47050

Version

ENST00000402813.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000361627 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000402813.3 CNGA1-001

Summary