Transcript: ENST00000520747.1 FCHSD1-006

Description

FCH and double SH3 domains 1 [Source:HGNC Symbol;Acc:25463]

Gene Synonyms

FLJ00007, NWK2

Location

Chromosome 5: 141,018,870-141,022,188 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1727 variant alleles and maps to 312 oligo probes.

Gene

This transcript is a product of gene ENSG00000197948.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435817.2	FCHSD1-001	4320	690aa	ENSP00000399259.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47295	Q86WN1	NM_033449.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522126.1	FCHSD1-003	2577	409aa	ENSP00000427796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86WN1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522783.1	FCHSD1-005	2477	598aa	ENSP00000428677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519800.1	FCHSD1-002	802	255aa	ENSP00000428776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGB1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518499.1	FCHSD1-011	714	211aa	ENSP00000430448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK49	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523856.1	FCHSD1-004	3932	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518160.1	FCHSD1-008	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522386.1	FCHSD1-009	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522763.1	FCHSD1-010	443	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520747.1	FCHSD1-006	3181	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,181 bps,

Version

ENST00000520747.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000375283 (version 1)

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Transcript: ENST00000520747.1 FCHSD1-006

Summary