Transcript: ENST00000482462.1 PDGFA-003

Description

platelet-derived growth factor alpha polypeptide [Source:HGNC Symbol;Acc:8799]

Gene Synonyms

PDGF-A, PDGF1

Location

Chromosome 7: 540,415-553,104 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 7578 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000197461.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354513.5	PDGFA-002	1308	211aa	ENSP00000346508.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34578	P04085 Q9UGN0	NM_002607.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402802.3	PDGFA-001	2305	196aa	ENSP00000383889.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47524	P04085 Q9UGN0	NM_033023.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400761.3	PDGFA-005	689	205aa	ENSP00000383572.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYW6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000405692.2	PDGFA-006	663	86aa	ENSP00000384673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426681.2	PDGFA-004	357	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482462.1	PDGFA-003	1770	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,770 bps,

Version

ENST00000482462.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322535 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000482462.1 PDGFA-003

Summary