Transcript: ENST00000478459.1 EPHB4-007

Description

EPH receptor B4 [Source:HGNC Symbol;Acc:3395]

Gene Synonyms

HTK, MYK1, TYRO11, Tyro11

Location

Chromosome 7: 100,404,040-100,411,710 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 3694 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSG00000196411.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358173.3	EPHB4-001	4329	987aa	ENSP00000350896.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5706	P54760 Q541P7	NM_004444.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360620.3	EPHB4-005	3789	935aa	ENSP00000353833.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96L35	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477446.1	EPHB4-004	1551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489808.1	EPHB4-003	921	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487222.1	EPHB4-002	5058	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478459.1	EPHB4-007	965	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492403.1	EPHB4-009	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492878.1	EPHB4-006	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467515.1	EPHB4-008	709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 965 bps,

Version

ENST00000478459.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347228 (version 1)

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Transcript: ENST00000478459.1 EPHB4-007

Summary