Transcript: ENST00000556782.1 PRPF39-010

Description

pre-mRNA processing factor 39 [Source:HGNC Symbol;Acc:20314]

Gene Synonyms

FLJ11128, FLJ20666

Location

Chromosome 14: 45,553,321-45,564,936 forward strand.

About this transcript

This transcript has 2 exons, is associated with 5093 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000185246.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355765.6	PRPF39-003	2868	669aa	ENSP00000348010.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9682	Q86UA1	NM_017922.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553605.1	PRPF39-009	582	140aa	ENSP00000452428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5M7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554081.1	PRPF39-007	3223	17aa	ENSP00000451988.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000424478.1	PRPF39-001	3174	152aa	ENSP00000390867.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554439.1	PRPF39-004	2982	152aa	ENSP00000451334.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554429.1	PRPF39-006	2977	152aa	ENSP00000451331.1	Nonsense mediated decay		F8WB90	-	-
ENST00000557477.1	PRPF39-011	724	90aa	ENSP00000452516.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477626.1	PRPF39-002	3507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554785.1	PRPF39-008	2121	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556353.1	PRPF39-013	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556782.1	PRPF39-010	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556718.1	PRPF39-012	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 645 bps,

Version

ENST00000556782.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410463 (version 1)

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Transcript: ENST00000556782.1 PRPF39-010

Summary