Transcript: ENST00000584217.1 TSHZ1-004

Description

teashirt zinc finger homeobox 1 [Source:HGNC Symbol;Acc:10669]

Gene Synonyms

CAA, NY-CO-33, SDCCAG33, TSH1

Location

Chromosome 18: 72,994,819-73,001,898 forward strand.

About this transcript

This transcript has 1 exon, is associated with 4007 variant alleles and maps to 288 oligo probes.

Gene

This transcript is a product of gene ENSG00000179981.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322038.5	TSHZ1-001	4992	1032aa	ENSP00000323584.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12009	A7YF73 H0YKA1 H0YN23 Q6ZSZ6	NM_005786.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580243.1	TSHZ1-005	3582	1077aa	ENSP00000464391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A7YF73 H0YKA1 H0YN23 Q6ZSZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560918.2	TSHZ1-002	1022	276aa	ENSP00000453834.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKA1 H0YN23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560661.1	TSHZ1-003	551	78aa	ENSP00000452718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584217.1	TSHZ1-004	7080	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 7,080 bps,

Version

ENST00000584217.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444914 (version 1)

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Transcript: ENST00000584217.1 TSHZ1-004

Summary