Transcript: ENST00000435451.1 ABCA13-005

Description

ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]

Gene Synonyms

FLJ33876, FLJ33951

Location

Chromosome 7: 48,547,468-48,559,741 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 5246 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSG00000179869.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435803.1	ABCA13-001	17184	5058aa	ENSP00000411096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47584	Q86UQ4	NM_152701.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411975.1	ABCA13-003	4480	831aa	ENSP00000391042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7 H0Y4D2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544596.1	ABCA13-201	4480	788aa	ENSP00000442634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435451.1	ABCA13-005	463	155aa	ENSP00000389861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000453246.1	ABCA13-004	4275	1192aa	ENSP00000396789.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417403.1	ABCA13-002	3528	317aa	ENSP00000409268.1	Nonsense mediated decay		Q86UQ4	-	-
ENST00000484268.1	ABCA13-006	3340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 463 bps, Translation length: 155 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000435451.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000341968 (version 1)

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Transcript: ENST00000435451.1 ABCA13-005

Summary