Transcript: ENST00000484268.1 ABCA13-006

Description

ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]

Gene Synonyms

FLJ33876, FLJ33951

Location

Chromosome 7: 48,352,664-48,444,262 forward strand.

About this transcript

This transcript has 15 exons, is associated with 40331 variant alleles and maps to 293 oligo probes.

Gene

This transcript is a product of gene ENSG00000179869.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435803.1	ABCA13-001	17184	5058aa	ENSP00000411096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47584	Q86UQ4	NM_152701.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411975.1	ABCA13-003	4480	831aa	ENSP00000391042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7 H0Y4D2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544596.1	ABCA13-201	4480	788aa	ENSP00000442634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435451.1	ABCA13-005	463	155aa	ENSP00000389861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000453246.1	ABCA13-004	4275	1192aa	ENSP00000396789.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417403.1	ABCA13-002	3528	317aa	ENSP00000409268.1	Nonsense mediated decay		Q86UQ4	-	-
ENST00000484268.1	ABCA13-006	3340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 0, Transcript length: 3,340 bps,

Version

ENST00000484268.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000341969 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000484268.1 ABCA13-006

Summary