Transcript: ENST00000435803.1 ABCA13-001

Description

ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]

Gene Synonyms

FLJ33876, FLJ33951

Location

Chromosome 7: 48,211,057-48,687,091 forward strand.

About this transcript

This transcript has 62 exons, is annotated with 41 domains and features, is associated with 205958 variant alleles and maps to 1564 oligo probes.

Gene

This transcript is a product of gene ENSG00000179869.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435803.1	ABCA13-001	17184	5058aa	ENSP00000411096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47584	Q86UQ4	NM_152701.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411975.1	ABCA13-003	4480	831aa	ENSP00000391042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7 H0Y4D2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544596.1	ABCA13-201	4480	788aa	ENSP00000442634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435451.1	ABCA13-005	463	155aa	ENSP00000389861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000453246.1	ABCA13-004	4275	1192aa	ENSP00000396789.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417403.1	ABCA13-002	3528	317aa	ENSP00000409268.1	Nonsense mediated decay		Q86UQ4	-	-
ENST00000484268.1	ABCA13-006	3340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 62, Coding exons: 62, Transcript length: 17,184 bps, Translation length: 5,058 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86UQ4

CCDS

This transcript is a member of the Human CCDS set: CCDS47584

Version

ENST00000435803.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000341964 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000435803.1 ABCA13-001

Summary