Transcript: ENST00000541083.1 DPY19L2-007

Description

dpy-19-like 2 (C. elegans) [Source:HGNC Symbol;Acc:19414]

Gene Synonyms

FLJ32949, SPATA34, SPGF9

Location

Chromosome 12: 63,991,674-64,014,002 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 8495 variant alleles and maps to 252 oligo probes.

Gene

This transcript is a product of gene ENSG00000177990.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324472.4	DPY19L2-001	4060	758aa	ENSP00000315988.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31851	B4E191 F5H1L7 F5H4G6 Q6NUT2	NM_173812.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413230.2	DPY19L2-003	1339	205aa	ENSP00000439794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E191	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541083.1	DPY19L2-007	603	124aa	ENSP00000443126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5T7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542209.1	DPY19L2-005	505	90aa	ENSP00000444932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4G6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538147.1	DPY19L2-006	491	47aa	ENSP00000439567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1L7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000306389.7	DPY19L2-002	1549	142aa	ENSP00000445878.1	Nonsense mediated decay		F5H0W1 F5H4G6	-	-
ENST00000439061.2	DPY19L2-008	1173	149aa	ENSP00000437474.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536494.1	DPY19L2-004	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541911.1	DPY19L2-009	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 603 bps, Translation length: 124 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000541083.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400785 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000541083.1 DPY19L2-007

Summary