Transcript: ENST00000561731.1 PTPN9-004

Description

protein tyrosine phosphatase, non-receptor type 9 [Source:HGNC Symbol;Acc:9661]

Gene Synonyms

MEG2, PTPMEG2

Location

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 4752 variant alleles and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306726.2	PTPN9-001	3943	593aa	ENSP00000303554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10280	P43378	NM_002833.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561731.1	PTPN9-004	545	174aa	ENSP00000455934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQT6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564970.1	PTPN9-005	726	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563835.1	PTPN9-002	338	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568108.1	PTPN9-003	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 545 bps, Translation length: 174 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000561731.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420324 (version 1)