Transcript: ENST00000498094.1 TNXB-004

Description

tenascin XB [Source:HGNC Symbol;Acc:11976]

Gene Synonyms

EDS3, HXBL, TENX, TN-X, TNX, TNXB1, TNXB2, TNXBS, XB, XBS

Location

Chromosome 6: 32,010,043-32,011,229 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 539 variant alleles and maps to 1367 oligo probes.

Gene

This transcript is a product of gene ENSG00000168477.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000451343.1	TNXB-006	3125	673aa	ENSP00000407685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4736	B6RHJ5 P22105	NM_032470.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375244.3	TNXB-001	13132	4244aa	ENSP00000364393.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B6RHJ5 E7EPZ9 Q9NPK7 Q9NPK8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375247.2	TNXB-201	13125	4242aa	ENSP00000364396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B6RHJ5 P22105 Q9NPK7 Q9NPK8	NM_019105.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479795.1	TNXB-007	2742	842aa	ENSP00000418248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7W4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442721.1	TNXB-003	372	7aa	ENSP00000389946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490077.1	TNXB-005	2756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486148.1	TNXB-002	2669	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498094.1	TNXB-004	792	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 792 bps,

Version

ENST00000498094.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268933 (version 1)

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Transcript: ENST00000498094.1 TNXB-004

Summary