Transcript: ENST00000546153.1 TMEM52B-006

Description

transmembrane protein 52B [Source:HGNC Symbol;Acc:26438]

Gene Synonyms

C12orf59, FLJ31166

Location

Chromosome 12: 10,338,996-10,342,862 forward strand.

About this transcript

This transcript has 2 exons, is associated with 2424 variant alleles and maps to 102 oligo probes.

Gene

This transcript is a product of gene ENSG00000165685.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298530.3	TMEM52B-001	2731	163aa	ENSP00000298530.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8619	Q4KMG9	NM_153022.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381923.2	TMEM52B-002	2601	183aa	ENSP00000371348.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66314	F5H230 Q4KMG9	NM_001079815.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536952.1	TMEM52B-201	1456	183aa	ENSP00000446102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66314	F5H230 Q4KMG9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543484.1	TMEM52B-005	542	90aa	ENSP00000445582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H230	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000545924.1	TMEM52B-004	364	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000334148.7	TMEM52B-003	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546153.1	TMEM52B-006	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 561 bps,

Version

ENST00000546153.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399650 (version 1)

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Transcript: ENST00000546153.1 TMEM52B-006

Summary