Transcript: ENST00000468690.1 HNRNPU-006

Description

heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048]

Gene Synonyms

HNRPU, SAF-A, SAFA, U21.1, hnRNP U, hnRNPU

Location

Chromosome 1: 245,019,716-245,020,378 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 358 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000153187.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283179.9	HNRNPU-002	3704	825aa	ENSP00000283179.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41479	Q00839 Q7Z4Q5 Q96BA7 Q9UEL2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444376.2	HNRNPU-001	5940	806aa	ENSP00000393151.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31081	B4DLR3 Q00839 Q7Z4Q5 Q9UEL2	NM_031844.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440865.1	HNRNPU-003	1067	241aa	ENSP00000410728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5RI18	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000366525.3	HNRNPU-004	2535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476241.1	HNRNPU-008	1687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483966.1	HNRNPU-007	1438	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465881.1	HNRNPU-005	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468690.1	HNRNPU-006	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 561 bps,

Version

ENST00000468690.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000097403 (version 1)

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Transcript: ENST00000468690.1 HNRNPU-006

Summary