Transcript: ENST00000444376.2 HNRNPU-001

Description

heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048]

Gene Synonyms

HNRPU, SAF-A, SAFA, U21.1, hnRNP U, hnRNPU

Location

Chromosome 1: 245,014,468-245,027,844 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 27 domains and features, is associated with 8022 variant alleles and maps to 1183 oligo probes.

Gene

This transcript is a product of gene ENSG00000153187.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000444376.2	HNRNPU-001	5940	806aa	ENSP00000393151.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31081	B4DLR3 Q00839 Q7Z4Q5 Q9UEL2	NM_031844.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000283179.9	HNRNPU-002	3704	825aa	ENSP00000283179.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41479	Q00839 Q7Z4Q5 Q96BA7 Q9UEL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440865.1	HNRNPU-003	1067	241aa	ENSP00000410728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5RI18	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000366525.3	HNRNPU-004	2535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476241.1	HNRNPU-008	1687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483966.1	HNRNPU-007	1438	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465881.1	HNRNPU-005	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468690.1	HNRNPU-006	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 5,940 bps, Translation length: 806 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q00839

CCDS

This transcript is a member of the Human CCDS set: CCDS31081

Version

ENST00000444376.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000097162 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000444376.2 HNRNPU-001

Summary