Transcript: ENST00000372998.1 LCN2-002

Description

lipocalin 2 [Source:HGNC Symbol;Acc:6526]

Gene Synonyms

24p3, HNL, MSFI, NGAL

Location

Chromosome 9: 130,911,797-130,915,418 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 1987 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000148346.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373017.1	LCN2-003	848	198aa	ENSP00000362108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540948.1	LCN2-202	1109	198aa	ENSP00000441666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P80188	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373013.2	LCN2-201	828	200aa	ENSP00000362104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV70	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000277480.2	LCN2-001	822	198aa	ENSP00000277480.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	NM_005564.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372998.1	LCN2-002	631	200aa	ENSP00000362089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470902.1	LCN2-004	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494317.1	LCN2-006	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488391.1	LCN2-005	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487719.1	LCN2-007	427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 631 bps, Translation length: 200 residues

Version

ENST00000372998.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054374 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000372998.1 LCN2-002

Summary