Transcript: ENST00000488117.1 C9orf72-002

Description

chromosome 9 open reading frame 72 [Source:HGNC Symbol;Acc:28337]

Gene Synonyms

ALSFTD, FTDALS, MGC23980

Location

About this transcript

This transcript has 10 exons, is associated with 12696 variant alleles and maps to 402 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380003.3	C9orf72-001	3200	481aa	ENSP00000369339.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6522	Q96LT7 Q9NUW0	NM_018325.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379997.3	C9orf72-003	1873	222aa	ENSP00000369333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6523	Q96LT7	NM_145005.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379995.1	C9orf72-005	777	222aa	ENSP00000369331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6523	Q96LT7	-	-
ENST00000488117.1	C9orf72-002	4808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461679.1	C9orf72-004	862	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 4,808 bps,

Version

ENST00000488117.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051970 (version 1)