Transcript: ENST00000422441.1 ITGA9-002

Description

integrin, alpha 9 [Source:HGNC Symbol;Acc:6145]

Gene Synonyms

ALPHA-RLC, ITGA4L, RLC

Location

About this transcript

This transcript has 16 exons, is annotated with 31 domains and features, is associated with 73665 variant alleles and maps to 470 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264741.5	ITGA9-001	7889	1035aa	ENSP00000264741.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2669	Q13797	NM_002207.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422441.1	ITGA9-002	2282	632aa	ENSP00000397258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411817.2	ITGA9-004	609	69aa	ENSP00000406533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461533.1	ITGA9-003	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,282 bps, Translation length: 632 residues

Version

ENST00000422441.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342360 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.