Transcript: ENST00000558960.1 ADAMTS17-002

Description

ADAM metallopeptidase with thrombospondin type 1 motif, 17 [Source:HGNC Symbol;Acc:17109]

Gene Synonyms

FLJ16363, FLJ32769

Location

Chromosome 15: 100,802,594-100,882,210 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 41840 variant alleles and maps to 78 oligo probes.

Gene

This transcript is a product of gene ENSG00000140470.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268070.4	ADAMTS17-001	6207	1095aa	ENSP00000268070.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10383	Q8TE56	NM_139057.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561355.2	ADAMTS17-004	954	120aa	ENSP00000458005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568565.1	ADAMTS17-009	643	214aa	ENSP00000456161.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000558960.1	ADAMTS17-002	571	68aa	ENSP00000453604.1	Nonsense mediated decay		H0YMH1	-	-
ENST00000559976.1	ADAMTS17-007	496	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560486.1	ADAMTS17-006	405	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558930.1	ADAMTS17-003	220	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000378898.4	ADAMTS17-005	1964	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557896.1	ADAMTS17-008	1745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 571 bps, Translation length: 68 residues

Version

ENST00000558960.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417545 (version 1)

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Transcript: ENST00000558960.1 ADAMTS17-002

Summary