Transcript: ENST00000478238.1 SYCP3-005

Description

synaptonemal complex protein 3 [Source:HGNC Symbol;Acc:18130]

Gene Synonyms

COR1, SCP3, SPGF4

Location

Chromosome 12: 102,122,426-102,125,444 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1287 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000139351.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392927.3	SYCP3-001	1120	236aa	ENSP00000376658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	NM_153694.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266743.2	SYCP3-002	1068	236aa	ENSP00000266743.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392924.1	SYCP3-003	845	236aa	ENSP00000376655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478139.1	SYCP3-004	3690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478238.1	SYCP3-005	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 665 bps,

Version

ENST00000478238.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000316482 (version 1)

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Transcript: ENST00000478238.1 SYCP3-005

Summary