Transcript: ENST00000535927.1 VAMP1-008

Description

vesicle-associated membrane protein 1 (synaptobrevin 1) [Source:HGNC Symbol;Acc:12642]

Gene Synonyms

SYB1, VAMP-1

Location

Chromosome 12: 6,573,837-6,579,843 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 3157 variant alleles and maps to 237 oligo probes.

Gene

This transcript is a product of gene ENSG00000139190.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396308.3	VAMP1-002	1113	118aa	ENSP00000379602.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41740	P23763	NM_199245.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361716.3	VAMP1-001	3449	117aa	ENSP00000355122.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31731	P23763	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400911.3	VAMP1-003	1068	116aa	ENSP00000383702.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44809	P23763	NM_016830.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535180.1	VAMP1-011	747	116aa	ENSP00000444181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZV7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544432.1	VAMP1-009	759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539047.1	VAMP1-007	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535927.1	VAMP1-008	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538970.1	VAMP1-010	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 578 bps,

Version

ENST00000535927.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399273 (version 1)

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Transcript: ENST00000535927.1 VAMP1-008

Summary