Transcript: ENST00000361716.3 VAMP1-001

Description

vesicle-associated membrane protein 1 (synaptobrevin 1) [Source:HGNC Symbol;Acc:12642]

Gene Synonyms

SYB1, VAMP-1

Location

Chromosome 12: 6,571,403-6,580,153 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 4482 variant alleles and maps to 558 oligo probes.

Gene

This transcript is a product of gene ENSG00000139190.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361716.3	VAMP1-001	3449	117aa	ENSP00000355122.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31731	P23763	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396308.3	VAMP1-002	1113	118aa	ENSP00000379602.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41740	P23763	NM_199245.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400911.3	VAMP1-003	1068	116aa	ENSP00000383702.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44809	P23763	NM_016830.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535180.1	VAMP1-011	747	116aa	ENSP00000444181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZV7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544432.1	VAMP1-009	759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000539047.1	VAMP1-007	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535927.1	VAMP1-008	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538970.1	VAMP1-010	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,449 bps, Translation length: 117 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P23763

CCDS

This transcript is a member of the Human CCDS set: CCDS31731

Version

ENST00000361716.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399076 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000361716.3 VAMP1-001

Summary