Transcript: ENST00000464025.1 LMO2-004

Description

LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:6642]

Gene Synonyms

RBTN2, RBTNL1, RHOM2, TTG2

Location

Chromosome 11: 33,880,122-33,886,697 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 2817 variant alleles and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSG00000135363.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257818.2	LMO2-001	2294	227aa	ENSP00000257818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7888	P25791	NM_005574.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395833.3	LMO2-002	1687	158aa	ENSP00000379175.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44567	P25791	NM_001142316.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411482.1	LMO2-003	1519	55aa	ENSP00000401967.1	Nonsense mediated decay		P25791	-	-
ENST00000493667.1	LMO2-005	390	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464025.1	LMO2-004	1550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465614.1	LMO2-006	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,550 bps,

Version

ENST00000464025.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347779 (version 1)

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Transcript: ENST00000464025.1 LMO2-004

Summary