Transcript: ENST00000575919.1 SLC52A1-004

Description

solute carrier family 52 (riboflavin transporter), member 1 [Source:HGNC Symbol;Acc:30225]

Gene Synonyms

FLJ10060, GPCR42, GPR172B, PAR2, RBFVD, RFT1, RFVT1, hRFT1

Location

Chromosome 17: 4,936,011-4,938,717 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1592 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSG00000132517.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000424747.1	SLC52A1-201	2412	448aa	ENSP00000399979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11066	Q9NWF4	NM_001104577.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512825.2	SLC52A1-002	2989	350aa	ENSP00000443026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5Y1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254853.5	SLC52A1-001	2377	448aa	ENSP00000254853.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11066	Q9NWF4	NM_017986.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573674.1	SLC52A1-003	2490	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575919.1	SLC52A1-004	2385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,385 bps,

Version

ENST00000575919.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438892 (version 1)

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Transcript: ENST00000575919.1 SLC52A1-004

Summary