Transcript: ENST00000463615.1 PDLIM4-007

Description

PDZ and LIM domain 4 [Source:HGNC Symbol;Acc:16501]

Gene Synonyms

RIL

Location

Chromosome 5: 131,593,389-131,602,454 forward strand.

About this transcript

This transcript has 3 exons, is associated with 3709 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000131435.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253754.3	PDLIM4-001	2282	330aa	ENSP00000253754.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4152	C9J542 P50479	NM_003687.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379018.3	PDLIM4-002	1006	246aa	ENSP00000368303.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47261	C9J542 P50479	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418373.1	PDLIM4-004	538	121aa	ENSP00000411753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J542	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484620.1	PDLIM4-005	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474421.1	PDLIM4-003	1084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462597.1	PDLIM4-006	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463615.1	PDLIM4-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 582 bps,

Version

ENST00000463615.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000145699 (version 2)

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Transcript: ENST00000463615.1 PDLIM4-007

Summary