Transcript: ENST00000467047.1 PCK1-002

Description

phosphoenolpyruvate carboxykinase 1 (soluble) [Source:HGNC Symbol;Acc:8724]

Gene Synonyms

PEPCK-C, PEPCK1, PEPCKC

Location

Chromosome 20: 56,136,136-56,141,423 forward strand.

About this transcript

This transcript has 2 exons, is associated with 3876 variant alleles and maps to 783 oligo probes.

Gene

This transcript is a product of gene ENSG00000124253.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319441.4	PCK1-001	2686	622aa	ENSP00000319814.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13460	P35558	NM_002591.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543666.1	PCK1-202	1439	305aa	ENSP00000445767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT64	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535860.1	PCK1-201	1358	313aa	ENSP00000444342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467047.1	PCK1-002	5074	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475833.1	PCK1-003	1037	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498194.1	PCK1-004	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485958.1	PCK1-006	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470051.1	PCK1-005	409	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 5,074 bps,

Version

ENST00000467047.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000267806 (version 1)

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Transcript: ENST00000467047.1 PCK1-002

Summary