Transcript: ENST00000558139.1 LHX4-003

Description

LIM homeobox 4 [Source:HGNC Symbol;Acc:21734]

Gene Synonyms

CPHD4, Gsh4

Location

About this transcript

This transcript has 2 exons, is associated with 8162 variant alleles and maps to 90 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263726.2	LHX4-001	7083	390aa	ENSP00000263726.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1338	Q5RLJ1 Q5RLJ2 Q5RLJ3 Q969G2 Q96JP7	NM_033343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561113.1	LHX4-002	603	151aa	ENSP00000452783.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558139.1	LHX4-003	721	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 721 bps,

Version

ENST00000558139.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415694 (version 1)