Transcript: ENST00000489403.1 CPSF3-005

Description

cleavage and polyadenylation specific factor 3, 73kDa [Source:HGNC Symbol;Acc:2326]

Gene Synonyms

CPSF-73, CPSF73, YSH1

Location

About this transcript

This transcript has 5 exons, is associated with 7444 variant alleles and maps to 220 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000238112.3	CPSF3-001	2345	684aa	ENSP00000238112.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1664	C9JZH6 G5E9W3 Q9UKF6	NM_016207.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460593.1	CPSF3-002	3157	647aa	ENSP00000418957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZH6 G5E9W3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475482.1	CPSF3-003	871	136aa	ENSP00000419744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZH6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489403.1	CPSF3-005	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489629.1	CPSF3-004	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 688 bps,

Version

ENST00000489403.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353333 (version 1)